RiboPy

RiboPy is a set of tools to work with ribo files. Ribo is a file format designed specifically for ribosome profiling data. Ribo files contain essential quantitative entities such as metagene coverage and UTR5, CDS and UTR3 counts.

Ribo files are used for downstream analysis of ribosome profiling data. RiboPy provide interfaces to read and write ribo files as well as generating plots.

Contents:

• Installation
  • General Advice
  • Requirements
  • Using pip
  • From Github
• Quickstart
  • Command line interface
  • Python API
  • R API
• Ribo File Format
  • Reference & Annotation
  • Read Length
  • Metagene
  • Region Counts
  • RNA-Seq
  • Coverage
  • Metadata
  • Ribo File Attributes
• CLI Reference
  • create
  • dump
  • info
  • merge
  • metadata
  • plot
  • rnaseq
• Python API
  • Quick reference
  • Ribo
• R API

Index

• Index