Installation

General Advice

We strongly recommend that users install conda first. Then, using conda, one can install RiboPy in a separate conda environment.

For example, the following command will install RiboPy inside a conda environment named ribo.

conda env create -f environment.yaml

The environment file above, environment.yaml, can be obtained from the RiboFlow repository.

Also, we highly encourage using conda for the installation of scientific Python packages: numpy, pandas and h5py.

Requirements

RiboPy is a python package and requires Python 3.6 or a later version. The python packages, that RiboPy requires, are automatically installed by pip. The command line interface (CLI) requires terminal access.

Using pip

pip install ribopy

From Github

Alternatively, you can install the latest version from github.

pip install git+https://github.com/ribosomeprofiling/ribopy.git